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Welcome to eRice |
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News |
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August 3, 2019
Improved eRice website design.
May 1, 2019
Improved Genome Annotation
March 25, 2019
Update 6mA predictor.
January 29, 2019
eRice v1.0 is online.
November 17, 2018
A paper describing DNA 6mA methylation in rice and its association with gene expression, plant development and stress responses has been published on Molecular Plant.
August 14, 2018
A review paper summarizing DNA 6mA methylation and RNA m6A in plant has been published on Molecular Plant.
May 8, 2018
A paper describing DNA 6mA methylation in Arabidopsis thaliana has been published on Developmental Cell. |
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Rice Epigenomic & Genomic Annotation
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Epigenetic marks played an essential role in various pathways, including transcription regulation, DNA replication and repair, development and differentiation as well as response to environmental factors. Thanks to single-molecule real-time (SMRT) sequencing, recent discovery of DNA N6-methyladenosine (6mA) methylation provided new insights into altering the activities and functions of developmental signals and stress responses. |
 
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In rice (Oryza sativa), genome-wide 6mA distribution at single-nucleotide resolution has been reported in two main and parental cultivars (Nipponbare, japonica group; 93-11, indica group), which were regarded as reference genomes of japonica and indica groups. Here, we have developed a species-specific epigenomic database, eRice (an Epigenomic & Genomic Annotation Database for Rice), to facilitate efficient epigenomic studies for both japonica and indica groups. |
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Reference:
Qian Zhang, Zhe Liang, Xuean Cui, Changmian Ji, Pingxian Zhang, Jingrong Liu, Adeel Riaz, Pu Yao, Min Liu, Yunpeng Wang, Tiegang Lu, Hao Yu, Hongkun Zheng, and Xiaofeng Gu* (2018)N6-methyladenine DNA methylation in Japonica and Indica rice genomes and its association with gene expression, plant development and stress responses; Molecular Plant, 11(12): 1492-1508. |
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